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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cucsa.005490.1 | ||||||||
Common Name | Csa_6G404200, LOC101207028 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 97aa MW: 10781.1 Da PI: 9.3987 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.9 | 3.1e-07 | 22 | 63 | 14 | 54 |
HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 d+i + ++L++l+P+ + s K s + +L+++++YI++L Cucsa.005490.1 22 DQIADLVSKLQRLIPElRNPRASHKASASRVLQETCNYIRNL 63 6899999*********666888999***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.432 | 8 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-8 | 22 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-8 | 22 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-4 | 22 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MSSRRSSRSR NSTAASPLIS DDQIADLVSK LQRLIPELRN PRASHKASAS RVLQETCNYI 60 RNLHREVDDL SERLSQLLAA TENDSAEATI IRSLFM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN682877 | 4e-64 | LN682877.1 Cucumis melo genomic scaffold, unanchored_scaffold01056. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004146747.1 | 4e-62 | PREDICTED: transcription factor PRE6-like | ||||
Swissprot | Q8GW32 | 1e-34 | PRE6_ARATH; Transcription factor PRE6 | ||||
TrEMBL | A0A0A0KDL6 | 5e-62 | A0A0A0KDL6_CUCSA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400007430 | 4e-38 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF567 | 34 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26945.1 | 1e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Cucsa.005490.1 |
Entrez Gene | 101207028 |
Publications ? help Back to Top | |||
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