PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.005490.1
Common NameCsa_6G404200, LOC101207028
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 97aa    MW: 10781.1 Da    PI: 9.3987
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.005490.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.1e-0722631454
                    HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    d+i +  ++L++l+P+ +    s K s + +L+++++YI++L
  Cucsa.005490.1 22 DQIADLVSKLQRLIPElRNPRASHKASASRVLQETCNYIRNL 63
                    6899999*********666888999***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.432863IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-82280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-82277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-42263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MSSRRSSRSR NSTAASPLIS DDQIADLVSK LQRLIPELRN PRASHKASAS RVLQETCNYI  60
RNLHREVDDL SERLSQLLAA TENDSAEATI IRSLFM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6828774e-64LN682877.1 Cucumis melo genomic scaffold, unanchored_scaffold01056.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146747.14e-62PREDICTED: transcription factor PRE6-like
SwissprotQ8GW321e-34PRE6_ARATH; Transcription factor PRE6
TrEMBLA0A0A0KDL65e-62A0A0A0KDL6_CUCSA; Uncharacterized protein
STRINGPGSC0003DMT4000074304e-38(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-35bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]